Publications

 

2017
San-Martin Á, Rodriguez-Aliaga P, Molina JA, Martin A, Bustamante C, Baez M. “Knots can impair protein degradation by ATP-dependent proteases”. PNAS 114 (2017).
Bustamante C. “Molecular machines one molecule at a time”. Prot. Sci. 26 (2017).
Lee A, Tsekouras K, Calderon C, Bustamante C, Pressé S. “Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis”. Chem. Rev. 117 (2017).
Herrera-Asmat O, Lubkowska L, Kashlev M, Bustamante CJ, Guerra DG, Kireeva ML. “Production and characterization of a highly pure RNA polymerase holoenzyme from Mycobacterium tuberculosis“. PREP 134 (2017).
2016
Rodriguez-Aliaga P, Ramirez L, Kim F, Bustamante C, Martin A. “Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP”. Nat. Struct. Mol. Biol. 23 (2016).
2015
Liu N, Chistol G, Bustamante C. “Two-subunit DNA escort mechanism and inactive subunit bypass in an ultra-fast ring ATPase”. eLife 4 (2015).
Kramer JR, Onoa B, Bustamante C, Bertozzi CR. “Chemically tunable mucin chimeras assembled on living cells”. PNAS 112 (2015).
Shin JY, Lopez-Garrido J, Lee SH, Diaz-Celis C, Fleming T, Bustamante C, Pogliano K. “Visualization and functional dissection of coaxial paired SpoIIIE channels across the sporulation septum”. eLife 4 (2015).
Doniselli N, Rodriguez-Aliaga P, Amidani D, Bardales JA, Bustamante C, Guerra DG, and Rivetti C. “New insights into the regulatory mechanisms of ppGpp and DksaA on Escherichia coli RNA polymerase-promoter complex” Nucl. Acids. Res 43 5249-5262 (2015).
Goldman DH, Kaiser CM, Milin A, Righini M, Tinoco I, and Bustamante C. “Mechanical Force releases nascent chain-mediated ribosome arrest in vitro and in vivo,” Science348 457-460 (2015).
Yan S, Wen JD, Bustamante CJ, and Tinoco I Jr., “Ribosome Excursions during mRNA Translocation Mediate Broad Branching of Frameshift Pathways,” Cell160 870-881 (2015).
Riedel C, Gabizon R, Wilson CAM, Hamadani K, Tsekouras K, Marqusee S, Pressé S, and Bustamante CJ, “The heat released during catalytic turnover enhances the enzymes diffusion”, Nature 517 227–230 (2015).
2014
Mejia Y, Nudler E, Bustamante C. “Trigger loop folding determines transcription rate of Escheria coli‘s RNA polymerase”. PNAS112 742-748 (2014).
Rollins G, Shin JY, Bustamante C, Pressé S. “Stochastic approach to the molecular counting problem in super resolution microscopy”. PNAS102 110-118 (2014).
Llorente-Garcia I, Lenn T, Erhardt H, Harriman OL, Liu L, Robson A, Chiu SW, Matthews S, Willis NJ, Bray CD, Lee SH, Shin JY, Bustamante CJ, Liphardt J, Friedrich T, Mullineaux CW, Leake
 MC, “Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation” 
Biochim Biophys Acta, 1837 811-824 (2014).
Presse S, Peterson J, Lee J, Elms P, MacCallum JL, Marqusee S, Bustamante C, & Dill K, “
Single Molecule Conformational Memory Extraction: P5ab RNA Hairpin,” 
J. Phys. Chem. B, 118:24 6597-6603 (2014).
Onoa B, Schneider AR, Brooks MD, Grob P, Nogales E, Geissler P, Niyogi K, Bustamante C, “
Atomic Force Microscopy of Photosystem II and Its Unit Cell Clustering Quantitatively Delineate the Mesoscale Variability in Arabidopsis Thylakoids,” 
Plos One, 9:7, e101470 (2014).
Rosenbloom AB., Lee SH, To M, Lee A, Shin JY, Bustamante CJ, “Optimized two color super resolution imaging of Drp1 during mitochondrial fission with a slow-switching Dronpa variant,” PNAS 111(36) 13093-13098; (2014).
Bustamante, C., Kaiser, C.., Maillard, R., Goldman, D., and Wilson, A.M. “Mechanisms of Cellular Proteostatis: Insights from Single-Molecule Approaches,” Annu. Rev. Biophys, 43, 119-140 (2014).
Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I Jr., Bustamante C, “
Direct measurement of the mechanical work during translocation by the ribosom
e,” eLife 2014;3:e03406, (2014).
Liu, S., Chistol, G., Hetherington, C.L., Tafoya, S., Aathavan, K., Schnitzbauer, J., Grimes, S., Jardine, P. & Bustamante, C., “A Viral Packaging Motor Varies Its DNA Rotation and Step Size to Preserve Subunit Coordination as the Capsid Fills,” Cell, 157:3, 702-713 (2014).
Kim HK, Liu F, Fei J, Bustamante C, Gonzalez RL Jr, Tinoco I Jr., “A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation”, Proc Natl Acad Sci U S A, 111(15), 5538-43 (2014).
Ishibashi T., Dangkulwanich M., Coello Y., Lionberger T.A., Lubkowska L., Ponticelli A.S., Kashlev M., and Bustamante C., “Transcription Factors IIS and IIF Enhance Transcription Efficiency by Differentially Modifying RNA Polymerase Pausing Dynamics”, PNAS 111, 3419 – 3424 (2014).
Liu S, Chistol G, Bustamante C. “Mechanical Operation and Intersubunit Coordination of Ring-Shaped Molecular Motors: Insights from Single-molecule Studies”, Biophys. J. 106, 1844-1858, (2014).
Dangkulwanich M, Ishibashi T, Bintu L, Bustamante C., “Molecular Mechanisms of Transcription through Single-Molecule Experiments”, Chem Rev., 114(6), 3203-23 (2014).
2013
Sen M, Maillard RA, Nyquist K, Rodriguez-Aliaga P, Pressé S, Martin A, Bustamante C., “The ClpXP protease unfolds substrates using a constant rate of pulling but different gears”, Cell, 155(3), 636-46 (2013).
Walter NG, Bustamante C., “Introduction to single molecule imaging and mechanics: seeing and touching molecules one at a time.,” Chem Rev. 2014 114(6), 3069-71 (2014).
Strycharska MS, Arias-Palomo E, Lyubimov AY, Erzberger JP, O’Shea VL, Bustamante CJ, Berger JM., “Nucleotide and partner-protein control of bacterial replicative helicase structure and function”, Mol Cell, 52(6), 844-54 (2013).
Dangkulwanich M, Ishibashi, T., Liu, S., Kireeva, M.L., Lubkowska, L., Kashlev, M, & Bustamante, C. “Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism,” eLife, 2:e00971 (2013).
2012
SangHyuk L., Shin, J. Y., Lee, A. & Bustamante, C., “Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM)”, PNAS 109, 17436-17441 (2012).
Hetherington, C. L.,  Moffitt, J. R., Jardine, P. J.. & Bustamante
, C., “Viral DNA Packaging Motors in Comprehensive Biophysics
”, Academic Press 4, 420-446 (2012).
Chistol, G., Liu, S., Hetherington, C. L., Moffitt, J. R., Grimes, S., Jardine, P. J., & Bustamante, C.,  “High Degree of Coordination and Division of Labor Among Subunits in a Homomeric Ring ATPase”, Cell 151, 1017-1028 (2012).
Jagannathan, B., Elms, P., Bustamante, C & Marqusee, S., “Direct Observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein,” PNAS, 109(44), 18820-17825 (2012).
Zamft, B, Bintu L, Ishibashi, T, and Bustamante C., “Nascent RNA Structure modules the transcription dynamics of RNA Polymerases”, PNAS 109, 8949-8953, (2012).
L. Bintu, T. Ishibashi, M. Dangkulwanich, Y-Yi, Wu, L. Lubkowska, M. Kashlev & C. Bustamante, “Nucleosomal Elements That Control the Topography of the Barrier to Transcription” Cell 151, 738-749 (2012).
Qu, X., Lancaster, L, Noller, H.F., & Bustamante, C., “Ribosomal protein S1 unwinds double-stranded RNA in multiple steps” PNAS 109, 14458-14463 (2012).
Elms, P., Chodera, J., Bustamante, C., & Marquesee, S. “The molten globule state is unusually deformable under mechanical force”, PNAS 109, 3769-3801 (2012).
2011
B. Sudhanshu, S. Mihardja, E. F. Koslover, S. Mehraeen, C. Bustamante, and A. J. Spakowitz. “Tension-dependent structural deformation alters single-molecule transition kinetics,” PNAS, 108, 1885 (2011).
Kaiser, C. M., Goldman, D.M , Chodera, J.D., Tinoco, I. Jr., & Bustamante, C., “The Ribosome Modulates Nascent Protein Folding”, Science 334, 1723-1727 (2011).
Bintu, L.,  Kopaczynska, M., Hodges, C., Lubkowska, L., Kashlev, M., & Bustamante, C., “The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes”, Nature Structural and Molecular Biology 18, 1394-1399 (2011).
Cheng, W., Arunajadai, S.G., Moffitt, J.,  Tinoco, I. Jr., & Bustamante, C., “Single-Base Pair Unwinding and Asynchronous RNA Release by the Hepatitis C Virus NS3 Helicase” Science, 33, 1746-1749 (2011).
Qu, X., Wen, J.D., Lancaster, L., Noller, H.F., Bustamante, C.,  & Tinoco, I. Jr., “The ribosome uses two active mechanisms to unwind messenger RNA during translation”, Nature 475, 118-121 (2011).
Maillard, R.A., Chistol, G., Sen, M., Righini, M., Tan, J.,  Kaiser, C.M., Hodges, C., Martin, A., & Bustamante, C., “ClpX(P) Generates Mechanical Force to Unfold and Translocate Its Protein Substrates” Cell 145, 459-469 (2011).
Bustamante, C., Cheng, W., & Mejia, Y., “Revisiting the Central Dogma One Molecule at a Time”, Cell 144, 480-491 (2011).
2010
Bustamante, C., & Moffitt, J.R., “Viral DNA Packaging: One Step at a Time”, Single Molecule Spectroscopy in Chemistry, Physics and Biology; Springer Series in Chemical Physics, 96, Part 5, 237-269 (2010).
Zohar, H.,  Hetherington, C.L.,  Bustamante, C., & Muller, S.J., “Peptide Nucleic Acids as Tools for Single- Molecule Sequence Detection and Manipulation”, American Chemical Society, Nano Lett 10(11), 4697-4701 (2010).
Yu, J., Cheng, W., Bustamante, C., & Oster, G., “Coupling Translocation with Nucleic Acid Undwinding by NS3 Helicase”, J. Molecular Biology, 404, 439-455 (2010).
Moffitt, J.R., Chemla, Y.R., & Bustamante, C., “Methods in Statistical Kinetics”, Methods in Enzymology 475, 221-257 (2010).
Moffitt, J.R., Chemla, Y.R., & Bustamante, C., “Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations”, PNAS, 107, 15739-15744 (2010).
Huguet, J.M., Bizarro, C.V., Forns, N., Smith, S.B., Bustamante, C., & Ritort, F., ”Single-molecule derivation of salt dependent base-pair free energies in DNA”, PNAS, 107, 15431-15436 (2010).
Flemming, T.C, Shin, J.Y.,  Lee, S.H.,  Becker, E., Huang, K.C., Bustamante, C., & Pogliano, K.,“Dynamic SpoIIIE assembly mediates septal membrane fission during Bacillus subtilis sporulation”, Genes Dev. 24 1160-1172 (2010).
Yu, J., Moffitt, J., Hetherington, C.L., Bustamante, C. & Oster, G., “Mechanochemistry of a Viral DNA Packaging Motor”, Journal of Molecular Biology 400, 186-203 (2010).
Shank, E., Cecconi, E., Dill, J.,  Marqusee, S., & Bustamante, C., “The folding cooperativity of a protein is controlled by its chain topology”, Nature 465, 637-640 (2010).
2009
Chen, G., Chang, K.Y., Chou, M.Y., Bustamante, C., Tinoco, I., Jr. “Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of-1 ribosomal frameshifting”. Proc. Natl. Acad. Sci. 106, 12706-11 (2009).
Karunakaran, A, Politzer,A, Kaplan,A, Moffitt, J.R.,Chemla, Y.R.,Grimes,S, Jardine, P, Anderson, D, & Bustamante, C. “Substrate Interactions and Promiscuity in a Viral DNA packaging Motor”, Nature 461, 669-673 (2009).
Ibarra, B, Chemla, Y.R., Plyasunov, S, Smith, S.B., Lazaro, J.M., Salas, M, & Bustamante, C. “Proofreading Dynamics of Processive DNA Polymerase”, The EMBO Journal, 28, 2794-802 (2009)
Hodges, C, Bintu, L, Lubkowska, L, Kashlev, M, Bustamante, C..“Nucleosomal Fluctuations Govern in the Transcription Dynamics of RNA Polymeras II”, Science, 325: 1172926 (2009).
Galburt E.A, Grill S, & Bustamante, C., “Single molecule transcription elongation” Methods, 48, 323-332 (2009).
Mangiarotti, L., Cellai, S., Ross, W., Bustamante, C. & Rivetti, C.,  “Sequence-dependent upstream DNA-RNA polymerase interactions in the open complex with lambdaR and lambdaPRM promoters and implications for the mechanisms of promoter interference”, J. Mol. Biol. 385(3) 748-60 (2009).
Moffitt, J.R., Chemla, Y.R., Aathavan, K., Grimes, S., Jardine, P.J., Anderson, D.L., & Bustamante, C., “Intersubunit coordination in a homomeric ring ATPase”, Nature, 457, 446-450 (2009).
2008
Cecconi, C., Shank, E.A., Dahlquist, F.W., Marqusee, S. Bustamante, C., “Protein-DNA Chimeras for Single Molecule Mechanical Folding Studies with the Optical Tweezer”, European Biophysics Journal, 37,6, (2008).
Alcaraz, J., Xu, R., Mor, H., Nelson, C.M., Mroue, R., Spencer, V.A., Brownfield, D., Radisky, D.C., Bustamante, C., M.J. Bissell, “Laminin and biomimetic extracelllular elasticity enchance functional differentiation in mammary epithelia”, The EMBO Journal, 9, 1-10, (2008).
Mejia, YX., Mao, H., Forde, NR., Bustamante, C., “Thermal Probing of E.coli RNA Polymerase”, Journal of Molecular Biology, 382,682, (2008).
Maragakis, P., Ritort, F., Bustamante, C., C., Karplus, M., & G. E. Crooks. “Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise. The Journal of Chemical Phyiscs 129, 024102 (2008).
Bustamante, C. “In singulo Biochemistry: When Less is More”, Annual Review of Biochemistry 77, 45-50 (2008).
Bustamante, C. “Physical Biology at the Crossroads”, ch. 5 in Physical Biology: From Atoms to Medicine, Ahmed Zewail, ed. Pps. 115-135, Imperial College Press: London (2008).
Chemla, Y.R., Moffitt, J.R., & Bustamante, C., “Exact Solutions for Kinetic Models of Macromolecular Dynamics”, J. Phys. Chem. B 112(19), 6025 -6044 (2008).
Ptacin, J.L., Nöllmann, M., Becker, E.C., Cozzarelli, N.R., Pogliano, K., & Bustamante, C., “Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis”, Nat. Struct. Mol. Biol. 15(5),485-493 (2008).
Wen, J-D., Lancaster, L., Hodges, C., Zeri, A-C., Yoshimura, S-H., Noller, H.F., Bustamante, C., & I. Tinoco, Jr., “Following translation by single ribosomes one codon at a time”, Nature 452, 598-603 (2008 cover article).
Moffitt, J.R., Chemla, Y.R., Smith, S.B., & Bustamante, C., “Recent Advances in Optical Tweezers”, Annual Review of Biochemistry 77, 205-228 (2008).
Downing, K., Comolli, L.R., Spakowitz, A.J., Siegerist, C.E., Jardine, P.J., Grimes, S., Anderson, D.L., & Bustamante, C., “Three-Dimensional Architecture of the Bacteriophage phi29 Packaged Genome and Elucidation of its Packaging Process”, Virology, 371(2), 267-277 (2008, Epub 2007).
Green, L., Kim, C.H., Bustamante, C., & I. Tinoco, Jr., “Characterization of the Mechanical Unfolding of RNA pseudoknots”, J. Mol. Biol. 375(2), 511-28 (2008: Epub 2007).
Bustamante, C., Chemla, Y.R., & J.R. Moffitt, “High-Resolution Dual-Trap Optical Tweezers with Differential Detection”, Ch 14 in Single-Molecule Techniques:  A Laboratory Manual.  Selvin, P. & T. Ha, eds. (CSHL, 2008).
2007
Cecconi, C., Shank, E.A., Marqusee, S., & C.J. Bustamante, “Studying Protein Folding with Laser Tweezers”, Proceedings of the International School Enrico Fermi. Società Italiana di Fisica: pps 145-160 (2007)
Vieregg, J., Cheng, W., Bustamante, C., & I. Tinoco, Jr., “Measurement of the Effect of Monovalent Cations on RNA Hairpin Stability.” J. Am. Chem. Soc. 129(48), 14966- 73 (2007).
Tang, M., Cecconi, C., Bustamante, C., & D.C. Rio, “Analysis of P element transposase protein-DNA interactions during early stages of transposition.” J. Biol. Chem. 282(39), 29002-12 (2007).
Cheng, W., Dumont, S., Tinoco, I., Jr., & Bustamante, C., “NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork”, Proc. Natl. Acad. Sci. USA 104(35), 13954-13959 (2007).
Choy, J.L., Parekh, S.H., Chaudhuri, O., Liu, A.P., Bustamante, C., Footer, M.J., Theriot, J.A., & D. A. Fletcher, “Differential force microscope for long time-scale biophysical measurements”, Rev. Sci. Instrum. 78(4), 043711 (2007).
Li, P.T.X., Bustamante, C., & I. Tinoco, Jr., “Real-time control of the energy landscape by force directs the folding of RNA molecules”, Proc. Natl. Acad. Sci. USA 104(17), 7039-7044 (2007).
Manosas, M., Wen, J.D., Li, P., Smith, S., Bustamante, C., Tinoco, I., Jr., & F. Ritort, “Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments”, Biophys J. 92, 3010-3021 (2007).
Wen, J.D., Manosas, M., Li, P., Smith, S., Bustamante, C., Ritort, F., & I. Tinoco, Jr., “Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results”, Biophys. J. 92, 2996-3009 (2007).
Leschziner, A.E., Saha, A., Wittmeyer, J., Zhang, Y., Bustamante, C., Cairns, B.R., & E. Nogales, “Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method”, Proc. Natl. Acad. Sci. USA 104(12), 4913-4918 (2007).
Hugel, T., Michaelis, J., Hetherington, C.L., Jardine, P.J., Grimes, S., Walter, J.M., Falk, W., Anderson, D.L., & Bustamante, C., “Experimental Test of Connector Rotation during DNA Packaging into Bacteriophage phi29 Capsids”, PLoS Biology 5(3), e59 (2007).
Nöllmann, M., Stone, M.D., Bryant, Z., Gore, J., Crisona, N.J., Hong, S-C., Mitelheiser, S., Maxwell, A., Bustamante, C.,  & N. R. Cozzarelli, “Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque” Nat. Struct. Mol. Biol. 14(4), 264-271 (2007).
Galburt, E.A., Grill, S.W., Wiedmann, A., Lubkowska, L., Choy, J., Nogales, E., Kashlev, M., & Bustamante, C., “Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner”, Nature 446, 820-823 (2007).
Walter, J.M., Greenfield, D., Bustamante, C. & J. Liphardt, “Light-powering Escherichia coli with proteorhodopsin”, Proc. Natl. Acad. Sci. USA 104, 2408-2412 (2007).
2006
Tinoco, I., Jr., Li, P.T.X., & Bustamante, C., “Determination of thermodynamics and kinetics of RNA reactions by force”, Quarterly Reviews of Biophysics 39(4), 325-360, (2006).
Ptacin, J.L., Nöllmann, M., Bustamante, C., & N.R. Cozzarelli, “Identification of the FtsK sequence-recognition domain”, Nat. Struct. Mol. Biol. 13, 1023 – 1025 (2006).
Moffitt, J.R., Chemla, Y.R., Izhaky, D., & Bustamante, C., “Differential detection of dual traps improves the spatial resolution of optical tweezers”, Proc. Natl. Acad. Sci. USA 103, 9006-9011 (2006)
Zhang, Y., Smith, C.L., Saha, A., Grill, S.W., Mihardja, S. Smith, S.B., Cairns, B.R., Peterson, C.L., & Bustamante, C., “DNA Translocation and Loop Formation Mechanism of Chromatin Remodeling by SWI/SNF and RSC”, Molecular Cell 24(4), 559-568 (2006).
Mihardja, S., Spakowitz, A., Zhang, Y., & Bustamante, C., “Effect of force on mononucleosomal dynamics”, PNAS, 103(43): 15871-15876 (2006).
Li, P.X.T., Bustamante, C., & I. Tinoco, Jr., “Unusual mechanical stability of a minimal RNA kissing complex”, Proc. Natl. Acad. Sci. USA 103, 15847-15852 (2006).
Gore J., Bryant, Z., Nöllmann M., Le M.U., Cozzarelli N.R., & Bustamante, C., “DNA overwinds when stretched”, Nature 442, 836-839 (2006).
Ritort, F., Mihardja, S., Smith, S.B., & Bustamante, C., “Condensation transition in DNA-polyaminoamide dendrimer fibers studied using optical tweezers”, Phys. Rev. Lett. 96(11), 118301-1 – 118301-4, (2006).
Gore, J., Bryant, Z., Stone, M.D., Nollmann, M., Cozzarelli, N.R., & Bustamante, C., “Mechanochemical analysis of DNA gyrase using rotor bead tracking”, Nature 439, 100-104 (2006).
Dumont, S., Cheng, W., Serebrov, V., Beran, R.K., Tinoco, I., Jr., Pyle, A.M., & Bustamante, C., “RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP”, Nature 439, 105-108 (2006).
Li, P.T., Collin, D., Smith, S.B., Bustamante, C., & I. Tinoco, Jr., “Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods”, Biophys. Journal 90(1), 250-60 (2006).
2005 and earlier
Bustamante, C., “Unfolding single RNA molecules: bridging the gap between equilibrium and non-equilibrium statistical thermodynamics”, Quarterly Reviews of Biophysics 38(4), 291-301 (2005).
Levy, O., Ptacin, J.L., Pease, P.J., Gore, J., Eisen, M.B., Bustamante, C., & N.R. Cozzarelli, “Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase”, Proc. Natl. Acad. Sci. USA 102, 17618-17623 (2005).
Gorostiza P., Tombola F., Verdaguer A., Smith S.B., Bustamante C., & E.Y. Isacoff, “Molecular handles for the mechanical manipulation of single-membrane proteins in living cells”, IEEE Trans Nanobioscience 4, 269-76 (2005).
Martinez J, Yuzvinsky T.D., Fennimore A.M., Zettl, A., Garcia R., & Bustamante, C., “Length control and sharpening of atomic force microscope carbon nanotube tips assisted by an electron beam”, Nanotechnology 16, 2493-2496, (2005).
Wilcox, A.J., Choy, J., Bustamante, C., & A. Matouschek, “Effect of protein structure on mitochondrial import”, Proc. Natl. Acad. Sci. USA 102, 15435-15440 (2005).
Brown, T.A., Cecconi, C., Tkachuk, A.N., Bustamante, C., & D.A. Clayton, “Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism”, Genes and Development 19, 2466-2476 (2005).
Mao, H.B., Arias-Gonzalez, J.R., Smith, S.B., Tinoco, I., & Bustamante, C., “Temperature control methods in a laser tweezers system”, Biophys. Journal 89, 1308-1316 (2005).
Bustamante, C., Liphardt, J., & F. Ritort, “The nonequilibrium thermodynamics of small systems”, Physics Today 58, 43-48 (2005).
Cecconi, C., Shank, E.A., Bustamante, C., & S. Marqusee, “Direct observation of the three-state of a single protein molecule”, Science 309, 2057-2060, (2005).
Collin, D., Ritort, F., Jarzynski, C., Smith, S.B., Tinoco, I., Jr., & Bustamante, C., “Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies”, Nature 437, 231-234 (2005).
Chemla, Y.R., Karunakaran, A., Michaelis, J., Grimes, S., Jardine P.J., Anderson, D.L., & Bustamante, C., “Mechanism of force generation of a viral DNA packaging motor”, Cell 122, 683-692 (2005).
Tang, M., Cecconi, C., Kim, H., Bustamante, C., & D. Rio, “Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes”, Genes and Development 19, 1422-1425 (2005).
Pease, P. J., Levy, O., Cost, G. J., Gore, J., Ptacin, J., Sherratt, D., Bustamante, C., & N. Cozzarelli, “Sequence-Directed DNA Translocation by Purified FtsK”, Science 307, 586-590 (2005).
Li, G., Levitus, M., Bustamante, C., & J. Widom, “Rapid Spontaneous Accessibility of Nucleosomal DNA”, Nature Structural and Molecular Biology 12, 46-53, (2005).
Trepagnier, E.H., Jarzynski, C., Ritort, F., Crooks, G.E., Bustamante, C., & J. Liphardt,  “Experimental Test of Hatano and Sasa’s Nonequilibrium Steady-state Equality”, Proc. Natl. Acad. Sci. USA 101(42), 15038-15041 (2004).
Goedken, E.R., Levitus, M., Johnson, A., Bustamante, C., O’Donnell, M., & J. Kuriyan, “Fluorescence Measurements on the E. coli DNA Polymerase Clamp Loader: Implications for Conformational Changes during ATP and Clamp Binding”, J. Mol. Bio. 5, 1047-1059 (2004).
Bustamante, C., Chemla, Y.R., Forde, N.R., & D. Izhaky, “Mechanical Process in Biochemistry”, Annual Review of Biochemistry 73, 705-748 (2004).
Gore, J., Ritort, F., & Bustamante, C., “Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements”, Proc. Natl. Acad. Sci. USA 100, 12564-12569 (2003).
Matouschek, A, & Bustamante, C., “Finding a protein’s Achilles Heel”, Nature Structural Biology 10-9, 674-676 (2003).
Bryant, Z., Stone, M.D., Gore, J., Smith, S.B., Cozzarelli, N.R., & Bustamante, C., “Structural Transitions and Elasticity from Torque Measurements on DNA”, Nature 424, 338-341 (2003).
Kellermayer, M., Bustamante, C., & H. Granzier, “Mechanics and Structure of Titin Oligomers explored with Atomic Force Microscopy”, Biochim. et  Biophys. Acta 1604, 105-114 (2003).
Stone, M.D., Bryant, Z., Crisona, N.J., Smith, S.B., Vologodskii, A., Bustamante, C., N.R. Cozzarelli, “Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases”, Proc. Natl. Acad. Sci. USA 100, 8654-8659 (2003)
Smith S.B., Cui Y., & Bustamante, C., “An Optical Trap An Optical-Trap Force Transducer that Operates By Direct Measurement of Light Momentum”, Methods in Enzymology 361, 134-162 (2003).
Onoa, B., Dumont, S., Liphardt, J., Smith, S.B., Tinoco, I., Jr., Bustamante, C., “Identifying the kinetic barriers to mechanical unfolding of the T. thermophila ribozyme”, Science 299, 1892-1895 (2003).
Rivetti, C., Codeluppi, S., Dieci, G., & Bustamante, C., “Visualizing RNA Extrusion and DNA Wrapping in Transcription Elongation Complexes of Bacterial and Eukaryotic RNA Polymerases”, J. Mol. Bio. 326, 1413-1426 (2003).
Keller, D., Swigon, D. & Bustamante, C., “Relating single molecule measurements to themodynamics”, Biophys. J. 84, 733-738 (2003).
Bustamante, C., Bryant Z., & S. B. Smith, “Ten Years of Tension; Single-Molecule DNA Mechanics”, Nature 421, 423-427 (2003).
Ritort, F., Bustamante, C., & I. Tinoco, Jr., “A Two-state Kinetic Model for the Unfolding of Single Molecules by Mechanical Force”, Proc. Natl. Acad. Sci. USA 99, 13544-13548 (2002).
Forde, N. R., Izhaky, D., Woodcock, G. R., Wuite, G.J.L., & Bustamante, C., “Using Mechanical Force to Probe the Mechanism of Pausing and Arrest During Continuous Elongation by Escherichia coli RNA Polymerase”, Proc. Natl. Acad. Sci. USA 99, 11682-11687 (2002).
Liphardt, J., Dumont, S., Smith, S.B., Tinoco, I., Jr., & Bustamante, C. “Equilibrium Information from Nonequalibrium Measurements in an Experimental test of Jarzynski’s Equality”, Science 296, 1832-1835 (2002).
Tinoco, I., Jr., & Bustamante, C., “The effect of Force on Thermodynamics and Kinetics of Single Molecule Reactions”, Biophys. Chem. 101-102,  513-533 (2002).
Park, W.J., Gerion, D., Zanchet, D., Woerz, A.S., Pellegrino, T., Micheel, C., Williams, S.C., Seitz, M., Bruehl, R.E., Bryant, Z., Bustamante, C., Bertozzi, C.R., & P.A. Alivisatos, “Conjugation of DNA to Silanized Colliodal Semiconductor Nanocrystalline Quantum Dots”, Chemistry of Materials 14, 2113-2119 (2002).
D’Erme, M. & Bustamante, C., “The Effect or Poly(ADP-ribosyl)ation & Mg++ Ions on Chromatin Structure Revealed by Scanning Force Microscopy”, Biochemistry 40, 10047-10955 (2001).
Smith, D.E., Tans, S.I., Smith, S.B., Grimes, S., Anderson, D.E., & Bustamante, C., “The Bacteriophage phi29 Portal Motor can Package DNA Against a Large Internal Force”, Nature 413, 748 (2001).
Liphardt, J., Onoa, B., Smith, S.B., Tinoco, I. Jr., & Bustamante, C., “Reversible Unfolding of Single RNA Molecule by Force”, Science 292, 733-737 (2001).
Bustamante, C., Keller, D., & G. Oster, “The Physics of Molecular Motors”, Acc. Chem. Res. 34, 412-420 (2001).
Postov, L., Ullsperberger, C., Keller, R.W., Bustamante, C., Vologodskii, A.V., & N.R. Cozzarelli, “Positive Torsional Strain Causes the Formation of a Four-way Junction in Replication Forks”, J. Biol. Chem. 276, 2790-2796 (2001).
Kellermeyer, M.K., Smith, S.B., Bustamante, C., & H.L. Granzier, “Mechanical Fatigue in Repetitively Stretched Single Molecules of Titin”, Biophys. J. 80, 852-863 (2001).
Kellermayer, M.S.Z., Smith, S., Bustamante, C., & H.L. Granzier, “Mechanical manipulation of single titin molecules with laser tweezers”, Adv. Exp. Med. Biol. 481, 111-26, (2000).
Bustamante, C., Macosko, J.C., & G.J.L. Wuite, “Grabbing the Cat by the Tail: Manipulating Molecules One by One” Nature Reviews Molecular and Cell Biology 1, 130 – 136 (2000).
Rivetti, C., Guthold, M., & Bustamante, C., “DNA wrapping in Eschericia coli RNA polymerase open promoter complexes revealed by scanning force microscopy in DNA-Protein Interactions”, Ch .8 in DNA-Protein Interactions: A Practical Approach, A. Travers & M. Buckle eds., Oxford University Press: Oxford (2000).
Baumann C.B., Bloomfield, V.A., Smith S.B., Bustamante, C., Wang, M.D., & S.M. Block, “Stretching of Single Collapse DNA Molecules”, Biophys. J. 78, 1965-1978 (2000).
Bustamante, C., Smith, S.B., Liphardt, J. & D. Smith, “Single Molecule Studies of DNA Mechanics”, Current Opinion in Molecular Biology 10, 279-285, (2000).
Guthold, M., Zhu, X., Rivetti, C., Yang, G., Thomson, N.H., Kasas, S., Hansma, H.G., Smith, B., Hansma, P.K., & Bustamante, C., “Direct Observation of One-Dimensional Diffusion and Transcription by Escherichia coli RNA Polymerase”, Biophys. J. 77, 2284-2294 (1999).
Wuite, G., Smith, S.B., Young, M., Keller D. & Bustamante, C., “Single-Molecule Studies of the Effect of Template Tension on T7 DNA Polymerase Activity”, Nature 404, 103-106 (2000).
Davenport, J.R., Wuite, G., Landick, R.A., & Bustamante, C., “Single-Molecule Study of Transcriptional Pausing and Arrest by E. coli RNA Polymerase”, Science 287, 2497-2500 (2000).
Yang, G., Cecconi, C., Baase, W. A., Vetter, I. R., Bryer, W.A., Haack, J.A., Matthews, B. W., Dahlquist, F. W., & Bustamante, C., “Solid-State Synthesis and Mechanical Unfolding of Polymers of T4 Lysozyme”, Proc. Natl. Acad. Sci. USA 97, 139-142 (2000).
 Wuite, G.L., Davenport, R.J., Rappaport, A., & Bustamante, C., “An Integrated Laser Trap/Flow Control Video Microscope for the Study of Single Biomolecules”, Biophys. J. 79, 1155-1167 (2000).
Cui, Y., & Bustamante, C., “Pulling a Chromatin Fiber Reveals the Forces that Maintain its Higher Order Structure”, Proc. Natl. Acad. Sci. USA 97, 127-132 (2000).
Keller, D., & Bustamante, C., “The Mechanochemistry of Molecular Motors”, Biophys. J. 78, 541-456, (2000).
Hegner, M., Smith, S.B., & Bustamante, C., “Polymerization and Mechanical Properties of Single RecA-DNA Filaments”, Proc. Natl. Acad. Sci. USA 96, 10109 – 101114 (1999).
Leuba, S., & Bustamante, C., “Analysis of chromatin by Scanning Force Microscopy”, ch.10 in Chromatin Protocols (Methods in Molecular Biology vol. 119), pps 143-160. P.B. Becker, ed. Humana Press Inc: Totowa, NJ.
Katritch V. Olson W., & Bustamante, C., “Analysis of Force-Extension Curves of Single Chromatin Fibers Using by MonteCarlo Simulations”, J. Mol. Biol. 295, 29-40, (2000)
Rivetti, C., Guthold, M., & Bustamante, C., “DNA Wrapping in E. coli RNA Polymerase Open Promoter Complexes Revealed by Scanning Force Microscopy”, EMBO Journal 18, 4464-4475 (1999).
Tinoco, I. Jr., & Bustamante, C., “How RNA Folds”, J. Mol. Biol. 293, 271-281 (1999).
Bustamante, C., Guthold, M., Zhu, X., & C. Yang, “Facilitated Target Location on DNA by Individual Escherichia coli RNA Polymerase Molecules Observed with the Scanning Force Microscope Operating in Liquid”, J. Biol. Chem. 274, 16665-16668 (1999).
Gurrieri, S., Smith, S.B., & Bustamante, C., “Trapping of Megabase-sized DNA Molecules During Agarose Gel Electrophoresis”, Proc. Natl. Acad. Sci. USA 96, 453-459, (1999).
Kellermayer, M.S., Smith, S.B., Bustamante, C., & H. L. Granzier, “Complete Unfolding of the TItin Molecule Under External Force”, J. Struct. Biol. 121, 197-205 (1998).
Rivetti, C., Walker, C., & Bustamante, C., “Polymer Chain Statistics and Conformational Analysis of DNA Molecules with Bends or Sections of Different Flexibility”, J. Mol. Biol. 280, 41-59 (1998).
Leuba, S.H., Bustamante, C., van Holde, K., & J. Zlatanova, “Linker Histones Tails and N-tails of Histone H3 are Redundant:  Scanning Force Microscopy Studies of Reconstituted Fibers”, Biophys. J. 74, 2830-2839 (1998).
Leuba, S.H., Bustamante, C., Zlatanova, J., & K. van Holde, “Contributions of Linker Histones and Histone H3 to Chromatin Structure:  Scanning Force Microscopy Studies on Trypsinized Fibers”, Biophys. J. 74, 2823-2829 (1998).
Stigter, D. & Bustamante, C., “Theory for the Hydrodynamic and Electrophoretic Stretch of Tethered B-DNA”, Biophys. J. 75, 1197-1210 (1998).
Gurrieri, S. & Bustamante, C., “Purification and Staining of Intact Yeast DNA Chromosomes and Real-time Observation of their Migration during Gel Electrophoresis”, Biochem. J. 326, 131-138 (1997).
Kasas, S., Thomson, N.H., Smith, B.L., Hansma, H.G., Zhu, X., Guthold, M., Bustamante, C., Kool, E.T., Kashlev, M., & P. Hansma, “Escherichia coli RNA Polymerase Activity Observed Using Atomic Force Microscopy”, Biochemistry 36, 461-468 (1997).
Bustamante, C., Rivetti, C., & D. Keller, “Scanning Force Microscopy Under Aqueous Solutions”, Current Opinion in Structural Biology 7(5), 709-716 (1997).
García, R., Tamayo, J. & Bustamante, C., “Scanning Tunneling Microscopy Imaging and Selective Modification of Purple Membranes”, Intl. J. of Imaging Systems and Technology 8, 168-174 (1997).
Bustamante, C., Godsey, M., Yang, G., Guthold, M. & C. Rivetti, “Facilitated Targeting and Transcription Imaged in Real Time with the Scanning Force Microscope”, Proceedings of the 1996 Welch Conference, Houston, Welch Foundation Press.
Rippe, K., Guthold, M., von Hippel, C. & Bustamante, C., “Transcriptional Activation via DNA-looping:  Visualization of Intermediates in the Activation Pathway of E. coli RNA Polymerase.σ54 Holoenzyme by Scanning Force Microscopy”, Journal of Molecular Biology 270, 125-138 (1997).
Baumann, C.G, Smith, S.B., Bloomfield, V.A. & Bustamante, C., “Ionic Effects on the Elasticity of Single DNA Molecules”, Proc. Natl. Acad. Sci. USA 94, 6185-6190 (1997).
Kellermeyer, M.Z., Smith, S.B., Granzier, H.L. & Bustamante, C., “Folding-Unfolding Transitions in Single Titin Molecules Characterized by Force-Measuring Laser Tweezers”, Science 276, 1112-1116 (1997).
Bustamante, C., Zuccheri, G., Leuba, S.H., Yang, G., & B. Samori, “Visualization and Analysis of Chromatin by Scanning Force Microscopy”, Methods:  A Companion to Methods in Enzymology 12, 73-83 (1997).
Wyman, C., Rombel, I., North, A.K., Bustamante, C., & S. Kustu, “Unusual Oligomerization Required for Activity of NtrC, a Bacterial Enhancer-binding Protein”, Science 275, 1658 – 1662 (1997).
128. Bustamante, C. & R. García, “El Microscopio de Fuerzas y sus Aplicaciones Biológicas. Investigación y Ciencia”, (Scientific American Edition in Spanish) Barcelona, No. 246, 76 – 82, March 1997.
Gurrieri, S., Smith, S.B., Wells, K.S., Johnson, I.D., & Bustamante, C., “Real-time Imaging of the Reorientation Mechanisms of YOYO-labeled DNA Molecules during 90o and 120o Pulsed Field Gel Electrophoresis”, Nucl. Acids Res. 24(23), 4759-4767 (1996).
Rivetti, C., Guthold, M., & Bustamante, C., “Scanning Force Microscopy of DNA Deposited onto Mica:  Equilibration vs. Molecular Trapping Studied by Statistical Polymer Chain Analysis”, J. of Molecular Biology 264(5), 919-932 (1996).
Singh, S., Turina, P., Bustamante, C., Keller, D., & Capaldi, R., “Topographical Structure of Membrane-bound Escherichia coli F1F0 ATP Synthase in Aqueous Buffer”, FEBS Letters 397,  30-34 (1996).
Garcia, R.A., Bustamante, C. & Reich, N.O., “Sequence-specific Recognition by Cytosine C5 and Adenine N6 DNA Methyltransferases Requires Different Deformations of DNA”, Proc. Natl. Acad. Sci. USA 93, 7618-7622 (1996).
Yang, G., Vesenka, J.P., & Bustamante, C., “Effects of Tip-sample Forces and Humidity on the Imaging of DNA with a Scanning Force Microscope”, Scanning 18, 344-350, (1996).
Yang, G., Leuba, S.H., & Bustamante, C.,  “Scanning Force Microscopy of Chromatin Fibers: A New Approach to an Old Problem”, In Journal of Biological Structure and Dynamics (Sarma, R.H. & Sarma, M.H., Ed.). New York:  Adenine Press 1, pp. 155-172  (1996).
Bustamante, C., Erie, D.A., & G. Yang, “Scanning Force Microscopy of Biological Macromolecules:  Present & Future.” In Nanofabrication and Biosystems  (Hoch, H.C., Jelinski, L.W., & Craighead, H.G., Ed.).  New York:  Cambridge University Press, pp. 159-179 (1996).
Bustamante, C. & C. Rivetti, “Visualizing Protein-Nucleic Acid Interactions on a Large Scale with the Scanning Force Microscope”, Ann. Rev. Biophys. Biomol. Struc, 25: 395-429 (1996).
Wheeler, C.J., Sukhu, L., Yang, G., Tsai, Y., Bustamante, C., Felgner, P., Norman, J. & M. Manthorpe, “Converting an Alcohol to an Amine in a Cationic Lipid Dramatically Alters the Co-lipid Requirement, Cellular Transfection Activity and the Ultrastructure of DNA-cytofectin Complexes”, Biochimica et Biophysica Acta, 1280: 1-11 (1996).
Smith, S.B., Cui, Y., & Bustamante, C., “Overstretching B-DNA:  The Elastic Response of Individual Double Stranded and Single Stranded DNA Molecules”, Science 271, 795 (1996).
Biscarini, F., Bustamante, C., & V.M. Kenkre, “Scanning Tunneling Microscopy. II. Calculation of Images of Atomic and Molecular Adsorbates”, Physical Review B (Condensed Matter) 51(16), 11089-102  (1995).
Kenkre, V.M., Biscarini, F., & Bustamante, C., “Scanning Tunneling Microscopy. I. Theoretical Framework and Coherence Effects”, Physical Review B (Condensed Matter) 51(16), 11074-88  (1995).
Dunlap, D., Smith, S., Bustamante, C., Tamayo, J., & R.A. Garcia, “A Very Low Current Scanning Tunneling Microscope”, Review of Scientific Instruments, 66(10), 4876-9 (1995).
Bustamante, C. & D. Keller, “Scanning Force Microscopy in Biology”, Physics Today 48(12), 32-38 (1995).
García, R., Tamayo, J., Soler, J.M. & Bustamante, C., “Physical Parameters that Control the Imaging of Purple Membranes with the Scanning Tunneling Microscope”, Langmuir 11, 2109-2114 (1995).
Leuba, S.H., Yang, G., Robert, C., van Holde, K., Zlatanova, J., & C.J. Bustamante, “Extended Chromatin Fibers:  Evidence from Scanning Force Microscopy Studies”, SPIE 2384, 33-44 (1995).
Zlatanova, J., Leuba, S.H., Bustamante, C., & K. van Holde, “Role of the Structural Domains of the Linker Histones and Histone H3 in the Chromatin Fiber Structure at Low-ionic Strength:  Scanning Force Microscopy (SFM) Studies on Partially Trypsinized Chromatin”, SPIE 2384, 22-32 (1995).
Yang, G., Leuba, S.H., & Bustamante, C., “Scanning Force Microscopy Study of Native and Linker Histone Depleted Chromatin Fibers”, SPIE 2384, 13-21 (1995).
Wyman, C., Grotkopp, E., Bustamante, C., & H. C.M. Nelson, “Determination of HSF2 Stoichiometry at Looped DNA Complexes using Scanning Force Microscopy”, EMBO 14(1),
Erie, D. & Bustamante, C., “DNA Bending by Cro Protein in Specific & Nonspecific Complexes:  Implications for Protein Site Recognition and Specificity Technical Comment”, Science 269, 989-990 (1995).
Yang, G., Leuba, S., Zlatanova, J., van Holde, K., & Bustamante, C., “Role of Linker Histones in Extended Chromatin Fibre Structure:  Modelling and Scanning Force Microscopy Studies”, Nature Structural Biology 1(11), 761-763 (1994).
Bustamante, C., Erie, D. A., & D. Keller, “Biochemical and Structural Applications of Scanning Force Microscopy”, Current Opinion in Structural Biology 4, 750-760 (1994).
Leuba, S., Yang, G., Robert, C., Samorí, B., van Holde, K., Zlatanova, J. & Bustamante, C., “Three-dimensional Structure of Extended Chromatin Fibers as Revealed by Tapping-mode Scanning Force Microscopy”, Proc. Natl. Acad. Sci. USA 91, 11621-11625 (1994).
Erie, D.A., Yang, G., Schultz, H.C. & Bustamante, C., “DNA Bending by Cro Protein in Specific & Nonspecific Complexes:  Implications for Protein Site Recognition and Specificity”, Science 266, 1562-1566 (1994).
Guthold, M., Bezanilla, M., Erie, D.A., Jenkins, B., Hansma, H. & Bustamante, C., “Following the Assembly of RNA Polymerase-DNA Complexes in Aqueous Solutions with the Scanning Force Microscope”, Proc. Natl. Acad. Sci. USA 91, 12927-12931 (1994).
Bustamante, C., Marko, J.F., Siggia, E.D., & S.B. Smith, “Entropic Elasticity of λ-phage DNA”, Science 265, 1599-1600 (1994).
Bustamante, C., Gurrieri, S., Pasternack, R.F., Purrello, R., & E. Rizzarelli, “Interaction of Water-Soluble Porphyrins with Single- and Double-Stranded Polyribonucleotides”, Biopolymers 34, 1099-1104 (1994).
Zlatanova, J., Leuba, S.H., Yang, G., Bustamante, C., & K. van Holde, “Linker DNA Accessibility in Chromatin Fibers of Different Conformations:  A Re-evaluation”, Proc. Natl. Acad. Sci. USA 91, 5277-5280, (1994).
Vesenka, J., Manne, S., Yang, G., Bustamante, C. & E. Henderson, “Humidity Effects on Atomic Force Microscopy of Gold-labeled DNA on Mica”, Scanning Microscopy 7(3), 781-788 (1993).
Bezanilla, M., Bustamante, C. & H.G. Hansma, “Improved Visualization of DNA in Aqueous Buffer with the Atomic Force Microscope”, Scanning Microscopy 7(4), 1145-1148, (1993).
Pasternack, R. F., Bustamante, C., Collings, P.J., Giannetto, A., & E.J. Gibbs, “Porphyrin Assemblies on DNA as Studied by a Resonance Light-Scattering Technique”, J. of the American Chem. Soc. 115, 5393-5399, (1993).
Dunlap, D.D., García, R., Schabtach, E. & Bustamante, C., “Masking Generates Contiguous Segments of Metal-coated and Bare DNA for STM Imaging”, Proc. Natl. Acad. Sci. USA 90, 7652-7655, (1993).
Bustamante, C., Keller, D. & G. Yang, “Scanning Force Microscopy of Nucleic Acids and Nucleo-Protein Assemblies”, Current Opinion in Structural Biology 3, 363-372, (1993).
Rees, W.A., Keller, R.W., Vesenka, J.P., Yang, G. & Bustamante, C., “Evidence of Bending in Open Promoter and Elongation Complexes of RNA Polymerase by Scanning Force Microscopy”, Science 260, 1646-1649, (1993).
Samorí, B., Siligardi, G., Quagliariello, C., Weisenhorn, A.L., Vesenka, J., & Bustamante, C., “Chirality of DNA Supercoiling Assigned by Scanning Force Microscopy”, Proc. Natl. Acad. Sci. USA 90, 3598-3601 (1993).
Bustamante, C., Gurrieri, S. & S.B. Smith, “Towards a Molecular Description of Pulsed Field Gel Electrophoresis”, Trends in Biotechnology 11(1), 23-30 (1993).
Smith, S.B., Finzi, L. & Bustamante, C., “Direct Mechanical Measurements of the Elasticity of Single DNA Molecules Using Magnetic Bead”, Science 258, 1122-1126 (1992).
Hansma, H.G., Vesenka, J., Kelderman, G., Morrett, H., Sinsheimar, R., Elings, V., Bustamante, C. & P.K. Hansma, “Reproducible Imaging and Dissection of Plasmid DNA under Liquid with the Atomic Force Microscopy”, Science 256, 1180-1184 (1992).
Keller, R., Keller, D., Bear, D., Vesenka, J., & Bustamante, C., “Electro-deposition Procedure of E. coli RNA Polymerase onto Au and Deposition of E. coli RNA Polymerase onto Mica for Observation with Scanning Force Microscopy”, Ultramicroscopy 42-44, 1173-1180 (1992).
Vesenka, J., Guthold, M., Tang, C., Keller, D., Delaine, E. & Bustamante, C., “A Substrate Preparation for Reliable Imaging of DNA Molecules with Scanning Force Microscope”, Ultramicroscopy 42-44, 1243-1249 (1992).
Vesenka, J., Hansma, H.G., Siegerist, C., Siligardi, G., Schabtach, E. & Bustamante, C., “Scanning Force Microscopy of Circular DNA and Chromatin in Air and Propanol”,  SPIE 1639, 127-137 (1992).
Biscarini, F., Bustamante, C. & V.M. Kenkre, “Scanning Tunneling Microscopy of Adsorbed Molecules:  Theoretical Considerations”, SPIE 1639, 111-116 (1992).
Kenkre, V.M., Biscarini, F. & Bustamante, C., “A Theoretical Framework for the Interpretation of STM Images of Adsorbates”, Ultramicroscopy 42-44, 122-127 (1992).
García, R., Jiang, Y., Schabtach, E. & Bustamante, C., “Deposition and Images of Metal-coated DNA with the Scanning Tunneling Microscope”, Ultramicroscopy  42-44, 1250-1254, (1992).
García, R., Jiang, Y., Dunlap D. & Bustamante, C., “Scanning Tunneling Microscopy of Metal-coated Biomolecules”, SPIE 1639, 118-126 (1992).
Bustamante, C., Vesenka, J., Tang, C., Rees, W., Guthold, M. & R. Keller, “Circular DNA Molecules Imaged in Air by Scanning Force Microscopy”, Biochemistry 31, 22-26 (1992).
Yuqiu, J., Ching-Bo, J., Keller, D., Bustamante, C., Beach, D., Houseal, T., Builes, E. & M.F. Maestre, “Mechanical, Electrical, and Chemical Manipulation of Single DNA Molecules”, Nanotechnology 3, 16-20 (1992).
Maestre, M.F., Bustamante, C., Snyder, P., Rowe, E. & R. Hansen, “Circular Intensity Differential Scattering (CIDS) Measurements in the Soft X-ray Region of the Spectrum (~16EV to 500 EV)”, SPIE 1548, 179-187 (1991).
Dunlap, D. & Bustamante, C., “Applications of Scanning Tunneling Microscopy to Structural Biology.”  In Seminars in Cell Biology. New Ways of Looking within Cells, R. Singer ed., pps 179-185. Saunders Scientific Publication: London, England (1991).
Keller, R.W., Bustamante, C. & D. Bear, “Scanning Tunneling Microscopy of E. coli RNA Polymerase Deposited onto an Au Substrate by an Electrochemical Process”, Proceedings of the 49th Annual Meeting EMSA, San Jose, California, 378-379 (August 1991).
Bustamante, C., Finzi, L., Sebring, P.E. & S.B. Smith, “Manipulation of Single DNA Molecules and Measurement of Their Elastic Properties under an Optical Microscope.” In Optical Methods for Ultrasensitive Detection and Analysis: Techniques and Applications, SPIE Proceedings Series Vol. 1435, 179-187 (1991).
Garab, G., Kieleczawa, J., Sutherland, J.C., Bustamante, C. & G. Hind, “Organization of Pigment Complexes into Macrodomains in the Thylakoid Membranes of Wild-Type and Chlorophyll B-less Mutant of Barley as Revealed by Circular Dichroism.  Photochem”, Photobiol. 54, 273-282 (1991).
Smith, S.B., Heller, C. & Bustamante, C., “Model and Computer Simulations of the Motion of DNA Molecules During Pulse Field Gel Electrophoresis”, Biochemistry 30, 5264-5274 (1991).
Bustamante, C., “Direct Observation and Manipulation of Single DNA Molecules Using Fluorescence Microscopy”, Ann. Rev. Biophys. Biophys. Chem. 20, 415-446 (1991).
Bustamante, C., Samorí, B. & E. Builes, “Daunomycin Inverts the Long Range Chirality of DNA Condensed States”, Biochemistry 30, 5661-5666 (1991).
Keller, R.W., Bear, D.G. & Bustamante, C., “Method for Imaging E. coli RNA Polymerase Holoenzyme with the Scanning Tunneling Microscope in an Aqueous Environment”, J. Vac. Sci. Technol. B(9), 1291-1297 (1991).
Keller, R.W., Bustamante, C. & D.G. Bear, “Scanning Tunneling Microscopy of E. coli RNA Polymerase Electrochemically Deposited onto an Au Substrate”, American Institute of Physics Proceedings on Scanned Probe Microscopy 166-175 (1992) Santa Barbara, California.
Finzi, L., Bustamante, C. & L. Ulibarri, “Differential Polarization Imaging V: Separation of Preferential Scattering and Preferential Absorption Contributions to the CD Image”, Biophys. J. 59, 1183-1193 (1991).
Kim, M-H. & Bustamante, C., “Differential Polarization Imaging IV: Images in Higher Born Approximations”, Biophys. J. 59, 1171-1182 (1991).
Wu, A.Y., Wang, F., Juang, C.-B., Bustamante, C., Yeh, C.-Y. & J.-C. Diels, “Electro-optic and Non-Linear Optical Properties of (Pb, La)(Zr, Ti)O3, BaTiO3, (Sr, Ba)Nb2O6, Ba2NaNb5O15, and beta-BaB2O4″, In The Seventh International Symposium on the Applications of Ferroelectrics, University of Illinois, Urbana, Illinois, (1990).
Wu, A.Y., Wang, F., Juang, C.-B., Bustamante, C., Yeh, C.Y., & J.-C. Diels, “2-D High Definition and High Resolution PLZT Thin Film Spatial Light Modulators”, In The Seventh International Symposium on the Applications of Ferroelectrics, University of Illinois, Urbana, Illinois (1990).
Bustamante, C., Gurrieri, S. & S.B. Smith, “Observation of Single DNA Molecules during Pulsed-Field Gel Electrophoresis by Fluorescence Microscopy”, In Methods: A Companion in Methods in Enzymology, San Diego, California (E. Lai & B. Birren, eds.), Academic Press, pp. 151-159 (1990).
Wu, A.Y., Wang, F., Juang, C.B. & Bustamante, C., “Electro-Optic and Non-Linear Optical Coefficients of (Pb, La)(Zr, Ti)O3, BaTiO3, (Sr, Ba)Nb2O6, and Ba2NaNb5O15 Thin Films”,  In The Symposium on Ferroelectric Thin Films, Spring Meeting, Materials Research Society Symposium Proceedings Vol. 200, Pp. 261, Myers ER, ed: San Francisco, California (1990).
Smith, S., Gurrieri, S. & Bustamante, C., “Fluorescence Microscopy and Computer Simulations of DNA Molecules in Conventional and Pulsed Field Gel Electrophoresis.”  In Current Communications in Molecular Biology, DNA Electrophoresis, Cold Spring Harbor, New York (L. Lerman, ed.), pp. 55-79 (1990).
Bustamante, C., “Recent Applications of Scanning Tunneling Microscopy to the Imaging of Biological Systems”, In Proceedings of the Twenty-Seventh Annual Electron Microscopy Colloquium, Bethesda, Maryland, June, pp. 1-3 (1990).
Wang, F., Juang, C.B., Bustamante, C. & A.Y. Wu, “Electro-Optic Properties of (Pb, La) (Zr, Ti)O3, BaTiO3 (Sr, Ba)Nb2O6 and Ba2NaNb5O15, Thin Films by a Confocal Scanning Differential Polarization Microscope”, In The 4th International SAMPE Conference, Vol. 4, Electronic Materials-Our Future, pp. 712-721 (RE Allred, RJ Martinez, & KB Wischmann, eds.), Society for the Advancement of Material and Process Engineering (1990).
Bustamante, C., Smith, S. & S. Gurrieri, “Fluorescence Microscopy & Computer Simulation. Studies of the Mechanisms of Reorientation of DNA Molecules Undergoing Pulsed Field Gel Electrophoresis”, In Proceedings of the SPIE Symposium on Bioimaging and Two-Dimensional Spectroscopy 1205, 190-202 (1990).
Bustamante, C., Keller, R.W., García, R., Gray, C. & M.F. Maestre, “STM Images of Metal-Coated and Un-Coated Biological Samples”, In Proceedings of the IV International Conference on Scanning Tunneling Microscopy, Oarai, Japan (1989) J. of Vacuum Science and Technology A-Vacuum Surfaces and Films 8(1), 706-712 (1990).
Garab, G., Finzi, L. & Bustamante, C., “Differential Polarization Imaging of Chloroplasts. Microscopic and Macroscopic Linear and Circular Dichroism”, In Light in Biology and Medicine, Vol. II (R.H. Douglas, ed.), Plenum Press: New York (1990).
Gurrieri, S., Rizzarelli, E., Beach, D. & Bustamante, C., “Imaging of Kinked Configurations of DNA Molecules Undergoing OFAGE Using Fluorescence Microscopy”, Biochemistry 29, 3396-3401 (1990).
Ulibarri, L. & Bustamante, C., “The Superposition Principle in Circular Differential Scattering of Hierarchical Chiral Structures”, J. Chem. Phys. 92, 875 (1990).
Bustamante, C., Houseal, T., Beach, D. & M.F. Maestre, “Fluorescence Microscopy Studies of the Supercoiling, Folding and Condensation of Bacterial Chromosomes Induced by Acridine Orange”, J. Biomol. Struct. Dyn. 8, 643-655 (1990).
Bustamante, C., “From molecules to cells:  Development of Advanced Microscopies”, In Proceedings of the III Balkan Conference in Electron Microscopy, (I. Margaritis, ed.), pp. 213-216 (1989).
Dunlap, D. & Bustamante, C., “Imaging of Single Stranded Nucleic Acids by Scanning Tunneling Microscopy”, Nature 342, 204-206 (1989).
Finzi, L., Bustamante, C. & G. Garab, “ Direct Observation of Large Chiral Domains in Chloroplast Thylakoid Membranes by Differential Polarization Microscopy”, Proc. Natl. Acad. Sci. USA 86, 8748-8752 (1989).
Keller, D., Bustamante, C. & R.W. Keller, “Imaging of Single DNA Molecules by Scanning Tunneling Microscopy”, Proc. Natl. Acad. Sci. USA 86, 5356-5360 (1989).
García, R., Keller, D., Panitz, J. & Bustamante, C., “Imaging of Metal-Coated Biological Samples by Scanning Tunneling Microscopy”, Ultramicroscopy 27, 367-374 (1989).
Houseal, T., Bustamante, C., Stump, R. & M.F. Maestre, “Imaging of the Motions of Single DNA Molecules in Solution, Using Fluorescence Microscopy”, Biophys. J. 56, 507-516 (1989).
Finzi, L., Beach, D., Bustamante, C. & G. Garab, “Differential Polarization Microscopy: Theory & Applications.” In Proceedings of the Electron Microscope Society of America (G.W. Bailey, ed.), pp. 60-61 (1988).
Garab, G., Wells, K.S., Finzi, L. & Bustamante, C., “Helically Organized Macroaggregates of Pigment-Protein Complexes in Chloroplasts: Evidence from Circular Intensity Differential Scattering”, Biochemistry 27, 5839-5843 (1988).
Juang, Ch.-B., Finzi, L. & Bustamante, C., “Design and Building of a Computer Controlled Confocal Scanning Differential Polarization Microscope”, Rev. Sci. Inst. 59, 2399-2408 (1988).
Bustamante, C. & M.F. Maestre, “Statistical Effects in the Absorption and Optical Activity of Particulate Suspensions”, Proc. Natl. Acad. Sci. USA 85, 8482-8486 (1988).
Dunlap, D., Bustamante, C. & B. Samorí, “Why Does Sinusoidally Modulated Polarization Introduce a Systematic Error in Linear Dichroism Measurements?  Analytical and Instrumental Solutions.  In Polarized Spectroscopy of Ordered Systems, a NATO Advanced Studies Institute Series (B. Samorí & E. Thulstrup, eds.), Vol. 242, Kluwer Academic Publishers, Dordrecht (1988).
Bustamante, C. & D. Keller, “Theory of Absorption and Circular Dichroism of Large Inhomogeneous Molecular Aggregates. In Polarized Spectroscopy of Ordered Systems, a NATO Advanced Studies Institute Series (B. Samorí and E. Thulstrup, eds.), Vol. 242, Kluwer Academic Publishers, Dordrecht (1988).
Bustamante, C., Kim, M. & D.A. Beach, “Differential Polarization Imaging: Theory and Applications”, In Polarized Spectroscopy of Ordered Systems, a NATO Advanced Studies Series (B. Samorí & E. Thulstrup, eds.), Vol. 242, Kluwer Academic Publishers: Dordrecht (1988).
Spada, G.P., Gottarelli, G., Samorí, B., Bustamante, C., & K.S. Wells, “A Study of Some Lyotropic Cholesteric Mesophases by Circular and Linear Dichroism and by Circular Intensity Differential Scattering”, Liq. Cryst. 3, 101-103 (1988).
Tinoco, I., Jr., Mickols, W., Maestre, M.F. & Bustamante, C., “Absorption, Scattering and Imaging of Biomolecular Structures with Polarized Light”, Ann. Rev. Biophys. Chem. 16, 319-349 (1987).
Beach, D.A., Wells, S.W. & Bustamante, C., “Differential Polarization Microscope Using an Image Dissector Camera & Phase-Lock Detection”, Rev. Sci. Inst. 58, 1987-1995 (1987).
Beach, D.A., Wells, S.W., Foucar, K. & Bustamante, C., “Differential Polarization Imaging. III. Experimental Studies on Red Blood Sickle Cells”, Biophys. J. 52, 947-954 (1987).
Kim, M-H., Ulibarri, L. & Bustamante, C., “Differential Polarization Imaging. II. Symmetry Properties of the Mueller Images and Calculations”, Biophys. J. 52, 928-946 (1987).
Kim, M-H., Ulibarri, L., Keller, D. & Bustamante, C., “Differential Polarization Imaging. I. Theory”, Biophys. J. 52, 911-927 (1987).
Patterson, C.W., Singham, S.B., Salzman, G.C., & Bustamante, C., “Circular Intensity Differential Scattering of Light by Hierarchical Molecular Structures”, J. Chem. Phys. 84, 1916-1921 (1986).
Bustamante, C., Maestre, M.F., & K.S. Wells, “Recent Advances in Polarization Spectroscopy: Perspectives of the Extension to the Soft X-Ray Region”, J. Photochem. Photobio. 44, 331-341 (1986).
Kim, M-H., Ulibarri, L., Keller, D., Maestre, M.F., & Bustamante, C., “The Psi-Type Circular Dichroism of Large Molecular Aggregates. III. Calculations”, J. Chem. Phys. 84, 2981-2989 (1986).
Keller, D. & Bustamante, C., “Theory of the Interaction of Light with Large Inhomogeneous Molecular Aggregates. II. Psi-type Circular Dichroism”, J. Chem. Phys. 84, 2972-2980 (1986).
Keller, D & Bustamante, C., “Theory of the Interaction of Light with Large Inhomogeneous Molecular Aggregates. I. Absorption”, J. Chem. Phys. 84, 2961-2971 (1986).
Wells, K.S., Beach, D.A., Keller, D. & Bustamante, C., “The Measurement of the Circular Intensity Differential Scattering of Chiral Aggregates: Studies on the Sperm Cell of Eledone cirrhosa”, Biopolymers 25, 2043-2064 (1986).
Bustamante, C., Mickols, W., Maestre M.F. & I., Tinoco, Jr., “Circular Differential Imaging”, Biotech. 3, 711-714 (1985).
Mickols, W., Katz, J.E., Maestre, M.F., Tinoco, I., Jr. & Bustamante, C., “An Imaging Differential Polarization Microscope with Electronic Readout”, Rev. Sci. Inst. 56, 2228-2236 (1985).
Allen, F.S. & Bustamante, C., eds. Applications of Circularly Polarized Radiation. New York, NY: Plenum Press (1985).
Keller, D. & Bustamante, C., “CIDS Calculations on Quartz at Hard X-Ray Wavelengths”. In Applications of Circularly Polarized Radiation, Allen, F.S. & Bustamante, C., eds. New York, NY: Plenum Press (1985).
Maestre, M.F., Salzman, G.S., Tobey, R. & Bustamante, C., “Circular Dichroism Studies on Single Chinese Hamster Cells”, Biochemistry 24, 5152-5157 (1985).
Maestre, M.F., Keller, D., Tinoco, I., Jr. & Bustamante, C., “Circular Differential Imaging of Chiral Objects. In Applications of Circularly Polarized Radiation, Allen, F.S. & Bustamante, C., eds. New York, NY: Plenum Press (1985).
Hall, K., Wells, K.S., Keller, D., Samorí, B., Maestre, M.F., Tinoco, I., Jr. & Bustamante, C., “Circular Intensity Differential Scattering of Planar and Focal Conic Orientations of Cholesteric Liquid Crystals”, In Applications of Circularly Polarized Radiation, Allen, F.S. & Bustamante, C., eds. New York, NY: Plenum Press (1985).
Bustamante, C., Maestre, M.F. & D. Keller, “Expressions for the Interpretation of Circular Intensity Differential Scattering of Chiral Aggregates”, Biopolymers 24, 1595-1612 (1985).
Keller, D., Bustamante, C., Maestre, M.F. & I. Tinoco, Jr., “Imaging of Optically Active Biological Structures Using Circularly Polarized Light”, Proc. Natl. Acad. Sci. USA 82, 401-405 (1985).
Keller, D., Bustamante, C., Maestre, M.F. & I. Tinoco, Jr., “Model Computations on the Differential Scattering of Circularly Polarized Light (CIDS) by Dense Macromolecular Particles”, Biopolymers 24, 783-797 (1985).
Bustamante, C., “The Contribution of Differential Scattering of Circularly Polarized Light to the Optical Rotatory Dispersion of a Sample”, J. Opt. Soc. Am. 1, 1114 (1984).
Beach DA, Wells, SW, Foucar K, Bustamante C. 1987. Differential Polarization Imaging. III. Experimental Studies on Red Blood Sickle Cells. Biophys. J. 52:947-954.
Kim MH, Ulibarri L,  Bustamante C. 1987. Differential Polarization Imaging. II. Symmetry Properties of the Mueller Images and Calculations. Biophys. J. 52:928-946.
Kim MH, Ulibarri L,  Keller D, Bustamante C. 1987. Differential Polarization Imaging. I. Theory. Biophys. J. 52:911-927.
Patterson CW, Singham SB, Salzman, GC, Bustamante C. 1986. Circular Intensity Differential Scattering of Light by Hierarchical Molecular Structures.  J. Chem. Phys. 84:1916-1921.
Bustamante C, Maestre MF, Wells KS. 1986. Recent Advances in Polarization Spectroscopy: Perspectives of the Extension to the Soft X-Ray Region.  J. Photochem. Photobio. 44: 331-341.
Kim MH, Ulibarri L, Keller, D, Maestre MF, Bustamante C. 1986. The Psi-Type Circular Dichroism of Large Molecular Aggregates. III. Calculations. J. Chem. Phys. 84:2981-2989.
Keller D, Bustamante C. 1986. Theory of the Interaction of Light with Large Inhomogeneous Molecular Aggregates. II. Psi-type Circular Dichroism. J. Chem. Phys. 84:2972-2980.
Keller D, Bustamante C. 1986. Theory of the Interaction of Light with Large Inhomogeneous Molecular Aggregates. I. Absorption. J. Chem. Phys. 84:2961-2971.
Wells KS, Beach DA, Keller D, Bustamante C. 1986. The Measurement of the Circular Intensity Differential Scattering of Chiral Aggregates: Studies on the Sperm Cell of Eledone cirrhosa. Biopolymers 25:2043-2064 .
Bustamante C, Mickols W, Maestre MF,  Tinoco I Jr. 1985. Circular Differential Imaging. Biotech. 3:711-714.
Mickols W, Katz JE, Maestre MF, Tinoco I Jr, Bustamante C. 1985. An Imaging Differential Polarization Microscope with Electronic Readout. Rev. Sci. Inst. 56:2228-2236.
Allen FS, Bustamante C. 1985. Applications of Circularly Polarized Radiation. New York (NY): Plenum Press .
Keller D, Bustamante C, 1985. Applications of Circularly Polarized Radiation. New York (NY): Plenum Press. Book Chapter, CIDS Calculations on Quartz at Hard X-Ray Wavelengths.
Maestre MF, Salzman GS, Tobey R, Bustamante C. 1985. Circular Dichroism Studies on Single Chinese Hamster Cells. Biochemistry 24:5152-5157.
Maestre MF, Keller D, Tinoco I Jr, Bustamante C. 1985. Applications of Circularly Polarized Radiation. New York (NY): Plenum Press. Book Chapter, Circular Differential Imaging of Chiral Objects.
Hall K, Wells KS, Keller D, Samorí B, Maestre MF, Tinoco I Jr, Bustamante C. 1985. Applications of Circularly Polarized Radiation. New York (NY): Plenum Press. Book Chapter, Circular Intensity Differential Scattering of Planar and Focal Conic Orientations of Cholesteric Liquid Crystals.
Bustamante C, Maestre MF, Keller D. 1985. Expressions for the Interpretation of Circular Intensity Differential Scattering of Chiral Aggregates. Biopolymers 24:1595-1612.
Keller D, Bustamante C, Maestre MF, Tinoco I Jr. 1985. Imaging of Optically Active Biological Structures Using Circularly Polarized Light. Proc. Natl. Acad. Sci. USA 82:401-405.
Keller D, Bustamante C, Maestre MF, Tinoco I Jr. 1985. Model Computations on the Differential Scattering of Circularly Polarized Light (CIDS) by Dense Macromolecular Particles. Biopolymers 24:783-797.
Bustamante C. 1984. The Contribution of Differential Scattering of Circularly Polarized Light to the Optical Rotatory Dispersion of a Sample. J. Opt. Soc. Am. 1:1114.
Tinoco I Jr, Maestre MF, Bustamante C, Keller D. 1984. Use of Circularly Polarized Light to Study Biological Macromolecules. Pure Appl. Chem. 56:1423-1428.
Katz JE, Wells KS, Ussery D, Maestre MF, Bustamante C. 1984.Design and Construction of a Circular Intensity Differential Scattering Instrument. Rev. Sci. Instr. 55:1574-1579.
Bustamante C, Wells KS, Keller D, Samorí B,  Maestre MF, Tinoco I Jr. 1984. Circular Intensity Differential Scattering of Cholesteric & Blue Mesophases. Mol. Cryst. Liq. Cryst. 111: 79-102.
Keller D, Bustamante C, Tinoco I Jr. 1984. Quantum Mechanical Treatment of Circular Intensity Differential Scattering: The Elastic Process. J. Chem. Phys. 81:1643-1649.
Bustamante C, Keller D, Maestre MF, Tinoco I Jr. 1984. Circular Intensity Differential Scattering of Dense Particles. J. Chem. Phys. 80:4817-4823.
Bustamante C, Stigter D. 1984. Intercalation of Cationic Dyes in the DNA Double Helix. Introductory Theory. Biopolymers 23:629-645.
Bustamante C, Tinoco I Jr, Maestre MF. 1983. Circular Differential Scattering Can Be an Important Part of the Circular Dichroism of Macromolecules. Proc. Natl. Acad. Sci. USA 80: 3568-3572.
Tinoco I Jr, Maestre MF, Bustamante, C. 1983. Differential Scattering of Circularly Polarized Light: Its Effects on Measurements of Circular Dichroism. Emerging Techniques of Trends in Biochemical Sciences 8:41-44.
Tinoco I Jr, Bustamante C, Maestre MF. 1982. Methods in Structural Molecular Biology, New York (NY): Plenum Press. Book Chapter. Chiroptical Methods and Their Applications to Biomolecular Systems; p. 260-303.
Bustamante C, Tinoco I Jr, Maestre MF. 1982. Circular Intensity Differential Scattering. IV. Randomly Oriented Species.  J. Chem. Phys. 76(7):3440-3446.
Maestre MF, Bustamante C, Hayes T, Subirana J, Tinoco I Jr. 1982. Differential Scattering of Circularly Polarized Light by the Helical Sperm Head of Octopus Eledone cirrhosa. Nature 298: 773-774.
Maestre MF, Bustamante, C, Hayes T, Subirana, J, Tinoco I Jr. 1982. Differential Scattering of Circularly Polarized Light by the Helical Sperm Head of Octopus Eledone cirrhosa. Nature 298: 773-774.
Bustamante C. 1981. Circular Intensity Differential Scattering of Chiral Molecules [dissertation]. [Berkeley, (CA)]: University of California, Berkeley.
Bustamante C, Tinoco I Jr, Maestre MF. 1981. Circular Intensity Differential Scattering of Helical Structures. III. A General Polarizability and Anomalous Scattering”, J. Chem. Phys. 74(9):4839-4850.
Bustamante C, Maestre MF, Tinoco I Jr. 1980. Circular Intensity Differential Scattering of Helical Structures. II. Applications. J. Chem. Phys. 73(12):6046-6055.
Bustamante C, Maestre, MF, Tinoco I Jr. 1980. Circular Intensity Differential Scattering of Helical Structures. I. Theory”, J. Chem. Phys. 73:4273-4281.
Tinoco I Jr, Bustamante C, Maestre MF. 1980. The Optical Activity of Nucleic Acids and their Aggregates. Ann. Rev. Biophys. Bioeng. 9:107-14.
Melgar E, Lizárraga B, Gil A, Bustamante C, Sanchez RD. 1979. Role of Metals on the Activity of Pancreatic Deoxyribonuclease. Archivos De Biologia Y Medicina Experimentales 12(2):236-237.
Lizárraga B, Bustamante C, Gil A, Melgar E. Multiple Conformation of Deoxyribonuclease A. 1979. Their Separation at Alkaline pH & Low Ionic Strength in the Presence of Ca2+.  Biochim. Biophys. Acta 579(2):298-302.
Lizárraga B, Sánchez D, Bustamante C, Melgar E. 1975. pH and Ca++ Induced Conformational Changes in Bovine Pancreatic DNAse.  Fed Proc. 34:700.

Single Molecule Biophysics at UC Berkeley